Preheat the oven to 350℉ (175℃). Lightly grease 10 wells in a standard 12-cup muffin tin with nonstick spray or line with silicone liners. Add 1 tablespoon of water to the empty muffin cups.
In a large bowl, sift together the 2 cups whole wheat flour, ¼ teaspoon baking powder, ½ teaspoon baking soda, 2 teaspoons ground cinnamon, ½ teaspoon grated nutmeg, and ½ teaspoon table salt. Whisk together to combine evenly.
In a separate bowl, mix together the ¾ cup unsweetened applesauce, ⅔ cup honey, 2 large eggs, ⅓ cup canola oil, and 1 teaspoon vanilla extract until well combined.
Add the wet ingredients to the flour mixture. Fold the wet ingredients into the dry ingredients until just combined.
Evenly divide the batter between the prepared muffin pan, each muffin cup holds about ¼ cup of batter.
Combine the 1 teaspoon ground cinnamon and 1 tablespoon granulated sugar in a small bowl. Sprinkle ½ teaspoon of the cinnamon sugar mixture over each muffin.
Bake for 18-20 minutes or until a toothpick inserted into the center comes out clean.
Cool the muffins on a cooling rack for 10 minutes and then remove from the muffin tin and cool completely.
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Notes
Flour: Feel free to use all-purpose flour or a 1:1 gluten-free all-purpose flour in place of whole wheat flour.Honey: Feel free to use maple syrup in place of the honey. Nutmeg: Grated whole nutmeg is best. If using ground nutmeg, only use ⅛ teaspoon, as it can be overwhelming. Storage: Store in the fridge in an airtight container for up to 5 days, or flash freeze, transfer to a freezer-safe bag and freeze for up to 3 months.