Chocolate Zucchini Muffins

4.96 from 23 votes
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These Chocolate Zucchini Muffins are EVERYTHING you crave in a good muffin. Made with whole grains, sweetened with honey, and featuring double the chocolate, this recipe delivers a perfectly moist muffin that tastes decadent, yet is packed with wholesome ingredients.

Have an abundance of zucchini? After enjoying these Double Chocolate Zucchini Muffins, try out my recipes for Pineapple Zucchini Bread, Grilled Vegetable Kabobs, and Air Fryer Zucchini Fries.

Healthy Zucchini Muffins with chocolate chips on wooden cutting board.

Double the Chocolate Double the Deliciousness

While I am obsessed with my grilled zucchini salad and I love sauteed zucchini, getting my kids excited to eat zucchini is another story.

However, they have no trouble devouring zucchini in the form of these Chocolate Zucchini Muffins.

With a rich chocolate batter and melty chocolate chips, these Double Chocolate Zucchini Muffins taste decadent, yet are loaded with veggies and whole grains. Not to mention, they use a lot less oil and the batter is naturally sweetened, making these muffins a wholesome treat!

The perfect zucchini recipe for kids-and adults too! 😉

Happy Cooking! xo Kristen

Notes on Ingredients

You will find the full list of ingredients, along with quantities in the recipe card. Below is a quick glance at what you need and tips to help you make the right selection.

Ingredients for zucchini muffins labeled on counter.
  • Zucchini: This calls for 1 cup of shredded zucchini, which is equivalent to 1 large zucchini or 2-3 smaller zucchini.
  • Flour: I recommend using whole white wheat flour, as it is still 100% whole grain, yet bakes up lighter and fluffier than traditional whole wheat flour. Feel free to replace with a 1:1 gluten-free all-purpose flour blend to keep the muffins gluten-free.
  • Double the Chocolate: Use both unsweetened cocoa powder and chocolate chips (milk chocolate, dark chocolate, or semi-sweet) to give these muffins their irresistible chocolate flavor.
  • Oil + Applesauce: Using a combination of unsweetened applesauce and oil (canola oil or melted and cooled coconut oil), ensures these muffins are light and tender, while drastically cutting down on the amount of fat added to the recipe.
  • Milk: Use your favorite milk or unsweetened non-dairy milk to help thin the batter.
  • Sweetener: Opt for honey or pure maple syrup, which sweeten the muffins naturally and add additional moisture to the batter.

How To Make Chocolate Zucchini Muffins

The following tips are provided to help you achieve perfect results. You will find the ingredient quantities and detailed instructions in the recipe card at the bottom of this post.

  1. Prepare Zucchini. Using a box grater or food processor fitted with a grating blade, place the zucchini in a piece of cheesecloth or clean kitchen towel and give it a good squeeze over the sink to remove the excess water from the zucchini-this is crucial to preventing your muffins from being dense and mushy.
Side by side photo showing grating zucchini.
  1. Sift Dry Ingredients Together. Because cocoa powder, baking powder, and baking soda are all prone to clumping together, sifting the ingredients through a fine-mesh strainer will keep your batter lump-free and each bite of your zucchini muffin delish.
Side by side bowl showing dry ingredients before and after sifting.
  1. Whisk Together Wet Ingredients. It is best to whisk the honey, egg, applesauce, oil, milk, and vanilla together prior to adding them to the flour mixture. This will help prevent over mixing the batter, which can result in dense muffins.
Side by side bowl before and after mixing together the wt ingredients.
  1. Fold Muffin Batter Together. When working with muffins or quick bread recipes, you don't want to overmix the ingredients. It is best to gently fold the wet ingredients into the dry ingredients until JUST combined. Once you no longer see pockets of flour, add in the prepared zucchini and chocolate chips, and using a spatula fold them into the muffin batter until JUST distributed.
Side by side photo showing muffin batter before and after adding zucchini and chocolate chips.
  1. Use an Ice Cream Scoop to Fill Muffin Tin. My best tip for scooping muffin batter into a prepared muffin tin is to use an ice cream scoop. Using an ice cream scoop will keep each muffin uniform in size and keeps the mess to a minimum.
Chocolate Zucchini Muffin Batter in muffin tip topped with chocolate chips.
  1. Bake. Bake until the muffins rise, the tops are set, and a toothpick inserted into the center of the muffin comes out dry. I recommend checking on the muffins 5-10 minutes prior to the baking time listed to ensure you don't over bake the muffins.
Chocolate Zucchini Muffin cut in half showing rich center with chocolate chips on cutting board.

Storage Instructions

  • At Room Temperature: Because these chocolate zucchini muffins are loaded with zucchini and are whole grains, they can grow mold quickly at room temperature. It is best to let the muffins cool fully, place them in an airtight container and store at room temperature for up to 24 hours.
  • Refrigerate: Once cooled, pop the muffins into an airtight container and store the zucchini muffins in the refrigerator for up to 5 days.
  • Freeze: Place the cooled muffins on a cookie sheet and freeze for 30-60 minutes until solid. Once frozen solid, place them in a freezer-safe bag and store them in the freezer for up to 3 months. Defrost in the fridge overnight, or warm in the microwave for 1-2 minutes to heat before serving.
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4.96 from 23 votes

Chocolate Zucchini Muffins

Servings: 12
Prep: 15 minutes
Cook: 20 minutes
Total: 30 minutes
Moist chocolate chip chocolate zucchini muffins on wooden cutting board.
These Chocolate Zucchini Muffins are made with whole wheat flour, double the chocolate, and loads of zucchini to create a decadent-tasting muffin that is healthy enough for breakfast.

Video

Ingredients 

  • 1 cup shredded zucchini, ~1 large or 2 medium zucchini
  • 1 ½ cups whole white wheat flour, or all-purpose flour
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder
  • ¼ teaspoon salt
  • ½ cup unsweetened cocoa powder
  • ½ cup honey, or maple syrup
  • 2 tablespoons canola oil , or melted and cooled coconut oil
  • ½ cup unsweetened applesauce
  • ¼ cup milk, any variety
  • 1 large egg
  • 1 teaspoon vanilla extract
  • ½ cup chocolate chips, + more for topping if desired

Instructions 

  • Preheat the oven to 350℉ (175℃). Prepare a muffin pan by lining it with paper or silicone liners or greasing the muffin cups really well with butter or nonstick spray.
  • Wash and dry the zucchini. Cut off the stem of the zucchini and using a box grater or food processor fitted with a grating blade, shred the zucchini. Remove excess moisture from the shredded zucchini by placing it into a piece of cheesecloth or a clean kitchen towel and squeezing it firmly over the sink. Alternatively, place the shredded zucchini into a fine-mesh colander and use your hands to really press down hard on the zucchini to remove the excess liquid. Measure out 1 cup shredded zucchini and set aside.
  • Using a fine-mesh strainer, sift the 1 ½ cups whole white wheat flour, 1 teaspoon baking soda, 1 teaspoon baking powder, ¼ teaspoon salt, and ½ cup unsweetened cocoa powder over a large mixing bowl. Alternatively, whisk the ingredients together, just be sure to remove any lumps.
  • In a separate smaller mixing bowl, whisk together the ½ cup honey, 2 tablespoons canola oil , ½ cup unsweetened applesauce, ¼ cup milk, 1 large egg, and 1 teaspoon vanilla extract until well combined. 
  • Add the wet ingredients to the dry ingredients and stir until just combined, careful to not overmix, as this can result in tough muffins.
  • Fold the shredded, drained zucchini and ½ cup chocolate chipsinto the batter.
  • Scoop out ¼ cup of batter into each muffin cup. Sprinkle each muffin with a couple of chocolate chips, if desired.
  • Bake for 18-22 minutes, or until toothpick inserted in middle comes out dry. 
  • Place the baked muffins on a cooling rack and allow them to sit in the muffin tin for 5-10 minutes, before removing them from the tin. Allow the muffins to cool fully before enjoying.

Notes

Storage: Store zucchini muffins in an airtight container at room temperature for 24 hours or in the refrigerator for up to 5 days. The muffins can be frozen for up to 3 months as well.  
Gluten-Free: Use an all-purpose gluten-free 1 to 1 baking flour
Dairy-Free: Be sure you use dairy-free chocolate chips and use your favorite non-dairy milk in place of milk for this recipe. 
Egg-Free: A flax egg substitute can be made to keep these muffins egg-free with great success. Simply mix 1 tablespoon of ground flaxseed with 2 tablespoons of water and let sit for 5 minutes before adding to the muffin batter.
Vegan Modifications: Use a flax egg to replace the egg, use maple syrup in place of honey, and use non-dairy chocolate chips and milk. 
Canola Oil Substitutes: Melted and cooled butter or coconut oil can be used in place of canola oil. 

Nutrition

Calories: 153kcalCarbohydrates: 31gProtein: 4gFat: 3gSaturated Fat: 2gCholesterol: 15mgSodium: 155mgPotassium: 160mgFiber: 3gSugar: 18gVitamin A: 68IUVitamin C: 2mgCalcium: 49mgIron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Tried this recipe?Mention @amindfullmom or tag #amindfullmom!

About Kristen Chidsey

Kristen is a wife, busy mom of two, and creator of A Mind "Full" Mom. From breakfast to dinner to dessert, it is her passion to share tried-and-true recipes that are big on flavor, made with easy-to-find ingredients, and family-approved!

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32 Comments

  1. Hi Kristen, I want to make these muffins and I need one clarification. You say to use 1 cup zucchini shredded, and squeezed dry. Does that mean 1 cup before squeezing, or 1 cup after squeezing?
    Thanks!

  2. 5 stars
    Thank you, thank you!! I had frozen zucchini left over from last year's garden and I needed something to make with it. When I saw these, I knew I had to try them... and I'm so glad I did. They were fantastic. Thank you!

  3. 5 stars
    I’ve made these muffins with WWF, applesauce, coconut oil and unsweetened vanilla almond milk, and love them!! Healthy snack.

  4. 4 stars
    I was seeking something to satisfy my sweet tooth as I cut sugars out of my diet, so these aren’t abundantly sweet - which is probably based on my past sugar filled baked goods taste buds. Since I only had sweetened applesauce I used approximately 3/8 c. Of a honey and agave nectar mix. I added a few pecans along with the (mini) chocolate chips. They are dense like a fudge brownie* and I am sure they will go well with a cup of coffee or a small (cheater!) glass of red wine for dessert! *I wonder if I used my electric beater whisk vs. hand whisking if they would be a tad lighter?

    1. Hi Susan! I am glad you found a treat to enjoy. I do think because you cut out some of the moisture (applesauce) it could be that. Typically overmixing results in tough muffins, so I doubt that was your issue.